PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0339.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 609aa    MW: 65830.2 Da    PI: 7.6154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0339.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31348406259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Kaladp0040s0339.1.p 348 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILITTYEGNHNHP 406
                          7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33332408IPR003657WRKY domain
SuperFamilySSF1182907.85E-28340408IPR003657WRKY domain
PROSITE profilePS5081129.895342408IPR003657WRKY domain
SMARTSM007741.7E-37347407IPR003657WRKY domain
PfamPF031061.8E-26349406IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDRGWGVTTV AEADRSVIPF FASKPSVINS FYSLKHSGGS SGSGMKIFPV SLSGSRERDM  60
PEGSGRRVVD EVDFFSGERE IMKAAAARDG ENSGVSVKEE VLHGEPILTK SDLNVNTRLD  120
LLTSNAGSDQ STVEDGRALD DKRTKTSQVS QMQLELGRLN AENQRLKEMF TQVSNNYQAL  180
QMHLIAFMQQ HQQQQQQQQL QAPVLESAQD HEMGGRKSED KVVAAPALPR QFLNLGPGSV  240
SQEPDELSNS SSGERTHSGS QHNNNLEIAS KRPRSDQENS RDGKGLADRE DSPDSETQGW  300
SRNNKAAKLG NNGNVVCETK QVEQQPTEAT MRKARVSVRA RSEAPMISDG CQWRKYGQKM  360
AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DTTILITTYE GNHNHPLPPA AVAMASTTSA  420
AASMLLSGSM SSTDGLMNPN FLARAILPCS SNIATISASA PFPTVTLDLT HSPNPLQLQR  480
QQRQQLQQQP PFAMPAANSL PQIFGPALYN QSRFSGLQLS QDPNLASKGL PLPVPIPPPS  540
LSQGQHTSFA DTVSAATAAI TNDPNFTAVI AAAISSFISA NNQRPNSDSS NPNTKSTPAT  600
TQQHHNQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23334410176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9XEC31e-143WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGVIT_10s0116g01200.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-120WRKY family protein